- recipe bioconductor-spicyr
Spatial analysis of in situ cytometry data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/spicyR.html
- License:
GPL (>=2)
- Recipe:
spicyR provides a series of functions to aid in the analysis of both immunofluorescence and mass cytometry imaging data as well as other assays that can deeply phenotype individual cells and their spatial location.
- package bioconductor-spicyr¶
-
- Versions:
1.10.0-0
,1.6.0-0
,1.4.0-0
,1.2.1-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-spatialexperiment
>=1.8.0,<1.9.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-spicyr
and update with:
conda update bioconductor-spicyr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-spicyr:<tag>
(see bioconductor-spicyr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-spicyr/README.html)