recipe bioconductor-splatter

Simple Simulation of Single-cell RNA Sequencing Data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/splatter.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-splatter/meta.yaml

Splatter is a package for the simulation of single-cell RNA sequencing count data. It provides a simple interface for creating complex simulations that are reproducible and well-documented. Parameters can be estimated from real data and functions are provided for comparing real and simulated datasets.

package bioconductor-splatter

Versions

1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.1-0,  1.4.3-0,  1.2.1-0

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-edger >=3.30.0,<3.31.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-scater >=1.16.0,<1.17.0

• bioconductor-singlecellexperiment >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-akima

• r-base >=4.0,<4.1.0a0

• r-checkmate >=2.0.0

• r-crayon

• r-fitdistrplus

• r-ggplot2

• r-locfit

• r-matrixstats

• r-scales

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-splatter

and update with:

conda update bioconductor-splatter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-splatter:<tag>

(see bioconductor-splatter/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-splatter/README.html)