- recipe bioconductor-splatter
Simple Simulation of Single-cell RNA Sequencing Data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/splatter.html
- License
GPL-3 + file LICENSE
- Recipe
Splatter is a package for the simulation of single-cell RNA sequencing count data. It provides a simple interface for creating complex simulations that are reproducible and well-documented. Parameters can be estimated from real data and functions are provided for comparing real and simulated datasets.
- package bioconductor-splatter¶
-
- Versions
1.18.1-0
,1.16.1-0
,1.14.1-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.1-0
,1.4.3-0
,1.18.1-0
,1.16.1-0
,1.14.1-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.1-0
,1.4.3-0
,1.2.1-0
- Depends
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-scater
>=1.22.0,<1.23.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
r-checkmate
>=2.0.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-splatter
and update with:
conda update bioconductor-splatter
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-splatter:<tag>
(see bioconductor-splatter/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-splatter/README.html)