recipe bioconductor-splicinggraphs

This package allows the user to create, manipulate, and visualize splicing graphs and their bubbles based on a gene model for a given organism. Additionally it allows the user to assign RNA-seq reads to the edges of a set of splicing graphs, and to summarize them in different ways.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SplicingGraphs.html

License

Artistic-2.0

Recipe

/bioconductor-splicinggraphs/meta.yaml

Links

biotools: splicinggraphs, doi: 10.1093/bioinformatics/18.suppl_1.s181

package bioconductor-splicinggraphs

Versions

1.22.1-0, 1.20.0-0, 1.18.0-0

Depends

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-graph >=1.60.0,<1.61.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rgraphviz >=2.26.0,<2.27.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-base >=3.5.1,<3.5.2.0a0

• r-igraph

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-splicinggraphs

and update with:

conda update bioconductor-splicinggraphs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-splicinggraphs:<tag>

(see bioconductor-splicinggraphs/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-splicinggraphs/README.html)