recipe bioconductor-sponge

Sparse Partial Correlations On Gene Expression

Homepage

https://bioconductor.org/packages/3.14/bioc/html/SPONGE.html

License

GPL (>=3)

Recipe

/bioconductor-sponge/meta.yaml

This package provides methods to efficiently detect competitive endogeneous RNA interactions between two genes. Such interactions are mediated by one or several miRNAs such that both gene and miRNA expression data for a larger number of samples is needed as input.

package bioconductor-sponge

Versions

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.1-0,  1.4.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dorng

• r-expm

• r-foreach

• r-glmnet

• r-grbase

• r-igraph

• r-iterators

• r-logging

• r-mass

• r-ppcor

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sponge

and update with:

conda update bioconductor-sponge

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sponge:<tag>

(see bioconductor-sponge/tags for valid values for <tag>)

Download stats

Link to this page

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