- recipe bioconductor-sponge
Sparse Partial Correlations On Gene Expression
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/SPONGE.html
- License
GPL (>=3)
- Recipe
This package provides methods to efficiently detect competitive endogeneous RNA interactions between two genes. Such interactions are mediated by one or several miRNAs such that both gene and miRNA expression data for a larger number of samples is needed as input.
- package bioconductor-sponge¶
-
- Versions
1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.1-0
,1.4.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-sponge
and update with:
conda update bioconductor-sponge
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-sponge:<tag>
(see bioconductor-sponge/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-sponge/README.html)