recipe bioconductor-sponge

This package provides methods to efficiently detect competitive endogeneous RNA interactions between two genes. Such interactions are mediated by one or several miRNAs such that both gene and miRNA expression data for a larger number of samples is needed as input.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SPONGE.html

License

GPL (>=3)

Recipe

/bioconductor-sponge/meta.yaml

package bioconductor-sponge

Versions

1.4.0-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• r-base >=3.5.1,<3.5.2.0a0

• r-data.table

• r-dorng

• r-expm

• r-foreach

• r-glmnet

• r-grbase

• r-igraph

• r-iterators

• r-logging

• r-mass

• r-ppcor

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sponge

and update with:

conda update bioconductor-sponge

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sponge:<tag>

(see bioconductor-sponge/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sponge/README.html)