recipe bioconductor-spsimseq

Semi-parametric simulation tool for bulk and single-cell RNA sequencing data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/SPsimSeq.html

License

GPL-2

Recipe

/bioconductor-spsimseq/meta.yaml

SPsimSeq uses a specially designed exponential family for density estimation to constructs the distribution of gene expression levels from a given real RNA sequencing data (single-cell or bulk), and subsequently simulates a new dataset from the estimated marginal distributions using Gaussian-copulas to retain the dependence between genes. It allows simulation of multiple groups and batches with any required sample size and library size.

package bioconductor-spsimseq

(downloads) docker_bioconductor-spsimseq

Versions

1.4.0-01.2.0-01.0.0-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-spsimseq

and update with:

conda update bioconductor-spsimseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spsimseq:<tag>

(see bioconductor-spsimseq/tags for valid values for <tag>)

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