- recipe bioconductor-spsimseq
Semi-parametric simulation tool for bulk and single-cell RNA sequencing data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/SPsimSeq.html
- License
GPL-2
- Recipe
SPsimSeq uses a specially designed exponential family for density estimation to constructs the distribution of gene expression levels from a given real RNA sequencing data (single-cell or bulk), and subsequently simulates a new dataset from the estimated marginal distributions using Gaussian-copulas to retain the dependence between genes. It allows simulation of multiple groups and batches with any required sample size and library size.
- package bioconductor-spsimseq¶
-
- Versions
1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-phyloseq
>=1.38.0,<1.39.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-spsimseq
and update with:
conda update bioconductor-spsimseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-spsimseq:<tag>
(see bioconductor-spsimseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-spsimseq/README.html)