-
recipe
bioconductor-srnadiff
Finding differentially expressed unannotated genomic regions from RNA-seq data
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/srnadiff.html
- License
GPL-3
- Recipe
srnadiff is a package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation. To do so, the package implements the identify-then-annotate methodology that builds on the idea of combining two pipelines approachs differential expressed regions detection and differential expression quantification.
-
package
bioconductor-srnadiff
¶ -
- Versions
1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-0
- Depends
bioconductor-biocparallel
>=1.24.0,<1.25.0
bioconductor-biocstyle
>=2.18.0,<2.19.0
bioconductor-deseq2
>=1.30.0,<1.31.0
bioconductor-genomeinfodb
>=1.26.0,<1.27.0
bioconductor-genomicalignments
>=1.26.0,<1.27.0
bioconductor-genomicfeatures
>=1.42.0,<1.43.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-gviz
>=1.34.0,<1.35.0
bioconductor-iranges
>=2.24.0,<2.25.0
bioconductor-rsamtools
>=2.6.0,<2.7.0
bioconductor-rtracklayer
>=1.50.0,<1.51.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=7.5.0
r-base
>=4.0,<4.1.0a0
r-rcpp
>=0.12.8
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-srnadiff
and update with:
conda update bioconductor-srnadiff
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-srnadiff:<tag>
(see bioconductor-srnadiff/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-srnadiff/README.html)