recipe bioconductor-statial

A package to identify changes in cell state relative to spatial associations

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Statial.html

License:

GPL-3

Recipe:

/bioconductor-statial/meta.yaml

Statial is a suite of functions for identifying changes in cell state. The functionality provided by Statial provides robust quantification of cell type localisation which are invariant to changes in tissue structure. In addition to this Statial uncovers changes in marker expression associated with varying levels of localisation. These features can be used to explore how the structure and function of different cell types may be altered by the agents they are surrounded with.

package bioconductor-statial

Versions:

1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• r-base >=4.2,<4.3.0a0

• r-concaveman

• r-data.table

• r-dplyr

• r-ggplot2

• r-spatstat

• r-spatstat.core

• r-spatstat.geom

• r-stringr

• r-tibble

• r-tidyr

• r-tidyselect

• r-tidyverse

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-statial

and update with:

conda update bioconductor-statial

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-statial:<tag>

(see bioconductor-statial/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-statial/README.html)