recipe bioconductor-stringdb

STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/STRINGdb.html

License:

GPL-2

Recipe:

/bioconductor-stringdb/meta.yaml

Links:

biotools: stringdb

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (https://string-db.org).

package bioconductor-stringdb

Versions:

2.10.0-0,  2.6.0-0,  2.4.0-0,  2.2.2-0,  2.2.0-0,  2.1.3-0,  2.0.0-0,  1.26.0-0,  1.24.0-1, 

2.10.0-0,  2.6.0-0,  2.4.0-0,  2.2.2-0,  2.2.0-0,  2.1.3-0,  2.0.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-0

Depends:

• r-base >=4.2,<4.3.0a0

• r-gplots

• r-hash

• r-igraph

• r-plotrix

• r-plyr

• r-png

• r-rcolorbrewer

• r-rcurl

• r-sqldf

Required By:

• bioconductor-pwomics

• bioconductor-ritan

• bioconductor-ppinfer

• bioconductor-imman

• bioconductor-xina

• bioconductor-netzoor

• bioconductor-coexnet

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-stringdb

and update with:

conda update bioconductor-stringdb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-stringdb:<tag>

(see bioconductor-stringdb/tags for valid values for <tag>)

Download stats

Link to this page

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