- recipe bioconductor-stroma4
Assign Properties to TNBC Patients
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/STROMA4.html
- License
GPL-3
- Recipe
This package estimates four stromal properties identified in TNBC patients in each patient of a gene expression datasets. These stromal property assignments can be combined to subtype patients. These four stromal properties were identified in Triple negative breast cancer (TNBC) patients and represent the presence of different cells in the stroma: T-cells (T), B-cells (B), stromal infiltrating epithelial cells (E), and desmoplasia (D). Additionally this package can also be used to estimate generative properties for the Lehmann subtypes, an alternative TNBC subtyping scheme (PMID: 21633166).
- package bioconductor-stroma4¶
-
- Versions
1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.1-0
,1.6.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-stroma4
and update with:
conda update bioconductor-stroma4
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-stroma4:<tag>
(see bioconductor-stroma4/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-stroma4/README.html)