recipe bioconductor-structuralvariantannotation

StructuralVariantAnnotation contains useful helper functions for dealing with structural variants in VCF format. The packages contains functions for parsing VCFs from a number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/StructuralVariantAnnotation.html

License

GPL-3

Recipe

/bioconductor-structuralvariantannotation/meta.yaml

package bioconductor-structuralvariantannotation

(downloads) docker_bioconductor-structuralvariantannotation

Versions

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-structuralvariantannotation

and update with:

conda update bioconductor-structuralvariantannotation

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-structuralvariantannotation:<tag>

(see bioconductor-structuralvariantannotation/tags for valid values for <tag>)