recipe bioconductor-subseq

Subsampling of high-throughput sequencing count data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/subSeq.html

License

MIT + file LICENSE

Recipe

/bioconductor-subseq/meta.yaml

Links

biotools: subseq, doi: 10.1093/bioinformatics/btu552

Subsampling of high throughput sequencing count data for use in experiment design and analysis.

package bioconductor-subseq

Versions

1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.1-0,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-qvalue >=2.20.0,<2.21.0

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-digest

• r-dplyr

• r-ggplot2

• r-magrittr

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-subseq

and update with:

conda update bioconductor-subseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-subseq:<tag>

(see bioconductor-subseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-subseq/README.html)