recipe bioconductor-subseq

Subsampling of high-throughput sequencing count data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/subSeq.html

License

MIT + file LICENSE

Recipe

/bioconductor-subseq/meta.yaml

Links

biotools: subseq, doi: 10.1093/bioinformatics/btu552

Subsampling of high throughput sequencing count data for use in experiment design and analysis.

package bioconductor-subseq

Versions

1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.1-0,  1.12.0-0, 

1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.1-0,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-qvalue >=2.26.0,<2.27.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-digest

• r-dplyr

• r-ggplot2

• r-magrittr

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-subseq

and update with:

conda update bioconductor-subseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-subseq:<tag>

(see bioconductor-subseq/tags for valid values for <tag>)

Download stats

Link to this page

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