recipe bioconductor-survtype

Subtype Identification with Survival Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/survtype.html

License:

Artistic-2.0

Recipe:

/bioconductor-survtype/meta.yaml

Subtypes are defined as groups of samples that have distinct molecular and clinical features. Genomic data can be analyzed for discovering patient subtypes, associated with clinical data, especially for survival information. This package is aimed to identify subtypes that are both clinically relevant and biologically meaningful.

package bioconductor-survtype

Versions:

1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends:

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-clustvarsel

• r-pheatmap

• r-survival

• r-survminer

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-survtype

and update with:

conda update bioconductor-survtype

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-survtype:<tag>

(see bioconductor-survtype/tags for valid values for <tag>)

Download stats

Link to this page

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