recipe bioconductor-switchde

Switch-like differential expression across single-cell trajectories

Homepage

https://bioconductor.org/packages/3.14/bioc/html/switchde.html

License

GPL (>= 2)

Recipe

/bioconductor-switchde/meta.yaml

Links

biotools: switchde, doi: 10.1093/bioinformatics/btw798

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

package bioconductor-switchde

Versions

1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0, 

1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-0

Depends

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggplot2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-switchde

and update with:

conda update bioconductor-switchde

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-switchde:<tag>

(see bioconductor-switchde/tags for valid values for <tag>)

Download stats

Link to this page

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