recipe bioconductor-switchde

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/switchde.html

License

GPL (>= 2)

Recipe

/bioconductor-switchde/meta.yaml

Links

biotools: switchde, doi: 10.1093/bioinformatics/btw798

package bioconductor-switchde

Versions

1.10.0-1, 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.0-0

Depends

• bioconductor-singlecellexperiment >=1.6.0,<1.7.0

• bioconductor-summarizedexperiment >=1.14.0,<1.15.0

• r-base >=3.6,<3.7.0a0

• r-dplyr

• r-ggplot2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-switchde

and update with:

conda update bioconductor-switchde

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-switchde:<tag>

(see bioconductor-switchde/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-switchde/README.html)