recipe bioconductor-synergyfinder

Calculate and Visualize Synergy Scores for Drug Combinations

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/synergyfinder.html

License:

Mozilla Public License 2.0

Recipe:

/bioconductor-synergyfinder/meta.yaml

Links:

biotools: synergyfinder, doi: 10.1093/bioinformatics/btx162

Efficient implementations for analyzing pre-clinical multiple drug combination datasets. It provides efficient implementations for 1.the popular synergy scoring models, including HSA, Loewe, Bliss, and ZIP to quantify the degree of drug combination synergy; 2. higher order drug combination data analysis and synergy landscape visualization for unlimited number of drugs in a combination; 3. statistical analysis of drug combination synergy and sensitivity with confidence intervals and p-values; 4. synergy barometer for harmonizing multiple synergy scoring methods to provide a consensus metric of synergy; 5. evaluation of synergy and sensitivity simultaneously to provide an unbiased interpretation of the clinical potential of the drug combinations. Based on this package, we also provide a web application (https://synergyfinderplus.org/) for users who prefer graphical user interface.

package bioconductor-synergyfinder

Versions:

3.6.0-0,  3.2.2-0,  3.0.3-0,  2.4.10-0,  2.4.0-0,  2.2.0-0,  2.0.1-0,  1.10.2-0,  1.10.0-0, 

3.6.0-0,  3.2.2-0,  3.0.3-0,  2.4.10-0,  2.4.0-0,  2.2.0-0,  2.0.1-0,  1.10.2-0,  1.10.0-0,  1.8.0-0,  1.6.1-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• r-base >=4.2,<4.3.0a0

• r-dplyr >=1.0.3

• r-drc >=3.0-1

• r-furrr >=0.2.2

• r-future >=1.21.0

• r-ggforce >=0.3.2

• r-ggplot2 >=3.3.3

• r-ggrepel >=0.9.1

• r-gstat >=2.0-6

• r-kriging >=1.1

• r-lattice >=0.20-41

• r-magrittr >=2.0.1

• r-metr >=0.9.1

• r-mice >=3.13.0

• r-nleqslv >=3.3.2

• r-pbapply >=1.4-3

• r-plotly >=4.9.3

• r-purrr >=0.3.4

• r-reshape2 >=1.4.4

• r-sp >=1.4-5

• r-spatialextremes >=2.0-9

• r-stringr >=1.4.0

• r-tidyr >=1.1.2

• r-tidyverse >=1.3.0

• r-vegan >=2.5-7

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-synergyfinder

and update with:

conda update bioconductor-synergyfinder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-synergyfinder:<tag>

(see bioconductor-synergyfinder/tags for valid values for <tag>)

Download stats

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