- recipe bioconductor-synlet
Hits Selection for Synthetic Lethal RNAi Screen Data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/synlet.html
- License:
GPL-3
- Recipe:
- Links:
biotools: synlet, doi: 10.1101/043570
Select hits from synthetic lethal RNAi screen data. For example, there are two identical celllines except one gene is knocked-down in one cellline. The interest is to find genes that lead to stronger lethal effect when they are knocked-down further by siRNA. Quality control and various visualisation tools are implemented. Four different algorithms could be used to pick up the interesting hits. This package is designed based on 384 wells plates, but may apply to other platforms with proper configuration.
- package bioconductor-synlet¶
-
- Versions:
1.28.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.28.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.1-0
,1.12.0-0
,1.10.0-0
,1.8.0-0
- Depends:
bioconductor-rankprod
>=3.24.0,<3.25.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-synlet
and update with:
conda update bioconductor-synlet
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-synlet:<tag>
(see bioconductor-synlet/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-synlet/README.html)