recipe bioconductor-systempiperdata

systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR’s overview vignette.

Homepage

https://bioconductor.org/packages/3.9/data/experiment/html/systemPipeRdata.html

License

Artistic-2.0

Recipe

/bioconductor-systempiperdata/meta.yaml

package bioconductor-systempiperdata

Versions

1.12.0-1, 1.10.0-0

Depends

• bioconductor-biocgenerics >=0.30.0,<0.31.0

• curl >=7.65.3,<8.0a0

• r-base >=3.6,<3.7.0a0

Required By

• bioconductor-rnaseqr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-systempiperdata

and update with:

conda update bioconductor-systempiperdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-systempiperdata:<tag>

(see bioconductor-systempiperdata/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-systempiperdata/README.html)