recipe bioconductor-systempiperdata

systemPipeRdata: Workflow templates and sample data

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/systemPipeRdata.html

License:

Artistic-2.0

Recipe:

/bioconductor-systempiperdata/meta.yaml

systemPipeRdata complements the systemPipeR workflow management system (WMS) by offering a collection of pre-designed data analysis workflow templates. These templates are easily accessible and can be readily loaded onto a user's system with a single command. Once loaded, the WMS can immediately utilize these templates for efficient end-to-end analysis, serving a wide range of data analysis needs.

package bioconductor-systempiperdata

(downloads) docker_bioconductor-systempiperdata

versions:
2.10.0-0,  2.6.0-0,  2.4.0-0,  2.2.0-0,  1.22.3-0,  1.22.0-0,  1.20.0-0,  1.18.1-0,  1.18.0-0, 

2.10.0-0,  2.6.0-0,  2.4.0-0,  2.2.0-0,  1.22.3-0,  1.22.0-0,  1.20.0-0,  1.18.1-0,  1.18.0-0,  1.17.4-0,  1.16.1-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

depends bioconductor-biocgenerics:

>=0.52.0,<0.53.0

depends bioconductor-biostrings:

>=2.74.0,<2.75.0

depends bioconductor-data-packages:

>=20241103

depends curl:

depends r-base:

>=4.4,<4.5.0a0

depends r-jsonlite:

depends r-remotes:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-systempiperdata

and update with::

   mamba update bioconductor-systempiperdata

To create a new environment, run:

mamba create --name myenvname bioconductor-systempiperdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-systempiperdata:<tag>

(see `bioconductor-systempiperdata/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-systempiperdata/README.html)