- recipe bioconductor-systempiperdata
systemPipeRdata: Workflow templates and sample data
- Homepage:
https://bioconductor.org/packages/3.14/data/experiment/html/systemPipeRdata.html
- License:
Artistic-2.0
- Recipe:
systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR's overview vignette.
- package bioconductor-systempiperdata¶
-
- Versions:
1.22.0-0
,1.20.0-0
,1.18.1-0
,1.18.0-0
,1.17.4-0
,1.16.1-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-shortread
>=1.52.0,<1.53.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-systempiperdata
and update with:
conda update bioconductor-systempiperdata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-systempiperdata:<tag>
(see bioconductor-systempiperdata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-systempiperdata/README.html)