recipe bioconductor-systempiperdata

systemPipeRdata: Workflow templates and sample data

Homepage

https://bioconductor.org/packages/3.13/data/experiment/html/systemPipeRdata.html

License

Artistic-2.0

Recipe

/bioconductor-systempiperdata/meta.yaml

systemPipeRdata is a helper package to generate with a single command NGS workflow templates that are intended to be used by its parent package systemPipeR. The latter is an environment for building end-to-end analysis pipelines with automated report generation for next generation sequence (NGS) applications such as RNA-Seq, RIBO-Seq, ChIP-Seq, VAR-Seq and many others. Detailed examples for using systemPipeRdata are given in systemPipeR's overview vignette.

package bioconductor-systempiperdata

Versions

1.20.0-0,  1.18.1-0,  1.18.0-0,  1.17.4-0,  1.16.1-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

Depends

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-genomicfeatures >=1.44.0,<1.45.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-rsamtools >=2.8.0,<2.9.0

• bioconductor-rtracklayer >=1.52.0,<1.53.0

• bioconductor-shortread >=1.50.0,<1.51.0

• curl >=7.77.0,<8.0a0

• r-base >=4.1,<4.2.0a0

• r-jsonlite

• r-remotes

Required By

• bioconductor-rnaseqr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-systempiperdata

and update with:

conda update bioconductor-systempiperdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-systempiperdata:<tag>

(see bioconductor-systempiperdata/tags for valid values for <tag>)

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