recipe bioconductor-tapseq

Targeted scRNA-seq primer design for TAP-seq

Homepage

https://bioconductor.org/packages/3.12/bioc/html/TAPseq.html

License

MIT + file LICENSE

Recipe

/bioconductor-tapseq/meta.yaml

Design primers for targeted single-cell RNA-seq used by TAP-seq. Create sequence templates for target gene panels and design gene-specific primers using Primer3. Potential off-targets can be estimated with BLAST. Requires working installations of Primer3 and BLASTn.

package bioconductor-tapseq

(downloads) docker_bioconductor-tapseq

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tapseq

and update with:

conda update bioconductor-tapseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tapseq:<tag>

(see bioconductor-tapseq/tags for valid values for <tag>)