recipe bioconductor-tapseq

Targeted scRNA-seq primer design for TAP-seq

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TAPseq.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-tapseq/meta.yaml

Design primers for targeted single-cell RNA-seq used by TAP-seq. Create sequence templates for target gene panels and design gene-specific primers using Primer3. Potential off-targets can be estimated with BLAST. Requires working installations of Primer3 and BLASTn.

package bioconductor-tapseq

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tapseq

and update with:

conda update bioconductor-tapseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tapseq:<tag>

(see bioconductor-tapseq/tags for valid values for <tag>)

Download stats

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