- recipe bioconductor-target
Predict Combined Function of Transcription Factors
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/target.html
- License:
GPL-3
- Recipe:
Implement the BETA algorithm for infering direct target genes from DNA-binding and perturbation expression data Wang et al. (2013) <doi: 10.1038/nprot.2013.150>. Extend the algorithm to predict the combined function of two DNA-binding elements from comprable binding and expression data.
- package bioconductor-target¶
-
- Versions:
1.12.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-target
and update with:
conda update bioconductor-target
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-target:<tag>
(see bioconductor-target/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-target/README.html)