recipe bioconductor-tcgamethylation450k

The Cancer Genome Atlas Illumina 450k methylation example data

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/TCGAMethylation450k.html

License:

GPL-2

Recipe:

/bioconductor-tcgamethylation450k/meta.yaml

The Cancer Genome Atlas (TCGA) is applying genomics technologies to over 20 different types of cancer. This package contains a small set of 450k array data in idat format.

package bioconductor-tcgamethylation450k

(downloads) docker_bioconductor-tcgamethylation450k

versions:
1.38.0-0,  1.36.0-0,  1.33.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.25.0-0, 

1.38.0-0,  1.36.0-0,  1.33.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.25.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-tcgamethylation450k

and update with::

   mamba update bioconductor-tcgamethylation450k

To create a new environment, run:

mamba create --name myenvname bioconductor-tcgamethylation450k

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-tcgamethylation450k:<tag>

(see `bioconductor-tcgamethylation450k/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tcgamethylation450k/README.html)