- recipe bioconductor-tcgautils
TCGA utility functions for data management
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/TCGAutils.html
- License:
Artistic-2.0
- Recipe:
A suite of helper functions for checking and manipulating TCGA data including data obtained from the curatedTCGAData experiment package. These functions aim to simplify and make working with TCGA data more manageable. Exported functions include those that import data from flat files into Bioconductor objects, convert row annotations, and identifier translation via the GDC API.
- package bioconductor-tcgautils¶
-
- Versions:
1.18.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.1-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicdatacommons
>=1.22.0,<1.23.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-multiassayexperiment
>=1.24.0,<1.25.0
bioconductor-raggedexperiment
>=1.22.0,<1.23.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-tcgautils
and update with:
conda update bioconductor-tcgautils
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-tcgautils:<tag>
(see bioconductor-tcgautils/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-tcgautils/README.html)