recipe bioconductor-tcseq

Time course sequencing data analysis

Homepage

https://bioconductor.org/packages/3.10/bioc/html/TCseq.html

License

GPL (>= 2)

Recipe

/bioconductor-tcseq/meta.yaml

Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.

package bioconductor-tcseq

Versions

1.10.0-0, 1.8.0-1, 1.6.0-0

Depends

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-edger >=3.28.0,<3.29.0

• bioconductor-genomicalignments >=1.22.0,<1.23.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rsamtools >=2.2.0,<2.3.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• r-base >=3.6,<3.7.0a0

• r-cluster

• r-e1071

• r-ggplot2

• r-locfit

• r-reshape2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tcseq

and update with:

conda update bioconductor-tcseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tcseq:<tag>

(see bioconductor-tcseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tcseq/README.html)