recipe bioconductor-tcseq

Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/TCseq.html

License

GPL (>= 2)

Recipe

/bioconductor-tcseq/meta.yaml

package bioconductor-tcseq

(downloads) docker_bioconductor-tcseq

Versions

1.6.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-genomicalignments

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cluster

Depends r-e1071

Depends r-ggplot2

Depends r-locfit

Depends r-reshape2

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tcseq

and update with:

conda update bioconductor-tcseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tcseq:<tag>

(see bioconductor-tcseq/tags for valid values for <tag>)