Package Recipe 'bioconductor-tcseq'

recipe bioconductor-tcseq¶

Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/TCseq.html
License: GPL (>= 2)
Recipe: /bioconductor-tcseq/meta.yaml

package bioconductor-tcseq¶

Versions: 1.6.0-0
Depends bioconductor-biocgenerics: >=0.28.0,<0.29.0
Depends bioconductor-edger: >=3.24.0,<3.25.0
Depends bioconductor-genomicalignments: >=1.18.0,<1.19.0
Depends bioconductor-genomicranges: >=1.34.0,<1.35.0
Depends bioconductor-iranges: >=2.16.0,<2.17.0
Depends bioconductor-rsamtools: >=1.34.0,<1.35.0
Depends bioconductor-summarizedexperiment: >=1.12.0,<1.13.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-cluster
Depends r-e1071
Depends r-ggplot2
Depends r-locfit
Depends r-reshape2
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tcseq

and update with:

conda update bioconductor-tcseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tcseq:<tag>

(see bioconductor-tcseq/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tcseq/README.html)