recipe bioconductor-tcseq

Time course sequencing data analysis

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/TCseq.html

License:

GPL (>= 2)

Recipe:

/bioconductor-tcseq/meta.yaml

Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.

package bioconductor-tcseq

Versions:

1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-cluster

• r-e1071

• r-ggplot2

• r-locfit

• r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tcseq

and update with:

conda update bioconductor-tcseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tcseq:<tag>

(see bioconductor-tcseq/tags for valid values for <tag>)

Download stats

Link to this page

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