recipe bioconductor-tcseq

Time course sequencing data analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TCseq.html

License:

GPL (>= 2)

Recipe:

/bioconductor-tcseq/meta.yaml

Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.

package bioconductor-tcseq

Versions:

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-cluster

• r-e1071

• r-ggplot2

• r-locfit

• r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tcseq

and update with:

conda update bioconductor-tcseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tcseq:<tag>

(see bioconductor-tcseq/tags for valid values for <tag>)

Download stats

Link to this page

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