recipe bioconductor-tenxbusdata

Single cell dataset from 10x in BUS format

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/TENxBUSData.html

License

BSD_2_clause + file LICENSE

Recipe

/bioconductor-tenxbusdata/meta.yaml

Download Barcode, UMI, and Set (BUS) format of 10x datasets from within R. This package accompanies the package BUSpaRse, which can load BUS format into R as a sparse matrix, and which has utility functions related to using the C++ command line package bustools.

package bioconductor-tenxbusdata

Versions

1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.1-0,  1.0.0-0

Depends

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tenxbusdata

and update with:

conda update bioconductor-tenxbusdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tenxbusdata:<tag>

(see bioconductor-tenxbusdata/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tenxbusdata/README.html)