recipe bioconductor-tenxbusdata

Single cell dataset from 10x in BUS format

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/TENxBUSData.html

License

BSD_2_clause + file LICENSE

Recipe

/bioconductor-tenxbusdata/meta.yaml

Download Barcode, UMI, and Set (BUS) format of 10x datasets from within R. This package accompanies the package BUSpaRse, which can load BUS format into R as a sparse matrix, and which has utility functions related to using the C++ command line package bustools.

package bioconductor-tenxbusdata

Versions

1.2.1-0,  1.0.0-0

Depends

• bioconductor-annotationhub >=2.20.0,<2.21.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-experimenthub >=1.14.0,<1.15.0

• curl >=7.69.1,<8.0a0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tenxbusdata

and update with:

conda update bioconductor-tenxbusdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tenxbusdata:<tag>

(see bioconductor-tenxbusdata/tags for valid values for <tag>)

Link to this page

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