recipe bioconductor-tenxio

Import methods for 10X Genomics files

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TENxIO.html

License:

Artistic-2.0

Recipe:

/bioconductor-tenxio/meta.yaml

Provides a structured S4 approach to importing data files from the 10X pipelines. It mainly supports Single Cell Multiome ATAC + Gene Expression data among other data types. The main Bioconductor data representations used are SingleCellExperiment and RaggedExperiment.

package bioconductor-tenxio

Versions:

1.0.0-0

Depends:

• bioconductor-biocbaseutils >=1.0.0,<1.1.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocio >=1.8.0,<1.9.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-matrixgenerics >=1.10.0,<1.11.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-matrix

• r-r.utils

• r-rcurl

• r-readr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tenxio

and update with:

conda update bioconductor-tenxio

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tenxio:<tag>

(see bioconductor-tenxio/tags for valid values for <tag>)

Download stats

Link to this page

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