recipe bioconductor-tenxvisiumdata

Visium spatial gene expression data by 10X Genomics

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/TENxVisiumData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-tenxvisiumdata/meta.yaml

Collection of Visium spatial gene expression datasets by 10X Genomics, formatted into objects of class SpatialExperiment. Data cover various organisms and tissues, and include: single- and multi-section experiments, as well as single sections subjected to both whole transcriptome and targeted panel analysis. Datasets may be used for testing of and as examples in packages, for tutorials and workflow demonstrations, or similar purposes.

package bioconductor-tenxvisiumdata

Versions:

1.6.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-spatialexperiment >=1.8.0,<1.9.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tenxvisiumdata

and update with:

conda update bioconductor-tenxvisiumdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tenxvisiumdata:<tag>

(see bioconductor-tenxvisiumdata/tags for valid values for <tag>)

Download stats

Link to this page

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