- recipe bioconductor-terratcgadata
OpenAccess TCGA Data on Terra as MultiAssayExperiment
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/terraTCGAdata.html
- License:
Artistic-2.0
- Recipe:
Leverage the existing open access TCGA data on Terra with well-established Bioconductor infrastructure. Make use of the Terra data model without learning its complexities. With a few functions, you can copy / download and generate a MultiAssayExperiment from the TCGA example workspaces provided by Terra.
- package bioconductor-terratcgadata¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-anvil
>=1.10.0,<1.11.0
bioconductor-biocfilecache
>=2.6.0,<2.7.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-multiassayexperiment
>=1.24.0,<1.25.0
bioconductor-raggedexperiment
>=1.22.0,<1.23.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-tcgautils
>=1.18.0,<1.19.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-terratcgadata
and update with:
conda update bioconductor-terratcgadata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-terratcgadata:<tag>
(see bioconductor-terratcgadata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-terratcgadata/README.html)