recipe bioconductor-terratcgadata

OpenAccess TCGA Data on Terra as MultiAssayExperiment

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/terraTCGAdata.html

License:

Artistic-2.0

Recipe:

/bioconductor-terratcgadata/meta.yaml

Leverage the existing open access TCGA data on Terra with well-established Bioconductor infrastructure. Make use of the Terra data model without learning its complexities. With a few functions, you can copy / download and generate a MultiAssayExperiment from the TCGA example workspaces provided by Terra.

package bioconductor-terratcgadata

Versions:

1.2.0-0

Depends:

• bioconductor-anvil >=1.10.0,<1.11.0

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-multiassayexperiment >=1.24.0,<1.25.0

• bioconductor-raggedexperiment >=1.22.0,<1.23.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-tcgautils >=1.18.0,<1.19.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-readr

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-terratcgadata

and update with:

conda update bioconductor-terratcgadata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-terratcgadata:<tag>

(see bioconductor-terratcgadata/tags for valid values for <tag>)

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