recipe bioconductor-tfarm

Transcription Factors Association Rules Miner

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TFARM.html

License:

Artistic-2.0

Recipe:

/bioconductor-tfarm/meta.yaml

It searches for relevant associations of transcription factors with a transcription factor target, in specific genomic regions. It also allows to evaluate the Importance Index distribution of transcription factors (and combinations of transcription factors) in association rules.

package bioconductor-tfarm

Versions:

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends:

• bioconductor-genomicranges >=1.50.0,<1.51.0

• r-arules

• r-base >=4.2,<4.3.0a0

• r-fields

• r-gplots

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tfarm

and update with:

conda update bioconductor-tfarm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tfarm:<tag>

(see bioconductor-tfarm/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tfarm/README.html)