recipe bioconductor-tidyomics

Easily install and load the tidyomics ecosystem

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/tidyomics.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-tidyomics/meta.yaml

The tidyomics ecosystem is a set of packages for ’omic data analysis that work together in harmony; they share common data representations and API design, consistent with the tidyverse ecosystem. The tidyomics package is designed to make it easy to install and load core packages from the tidyomics ecosystem with a single command.

package bioconductor-tidyomics

(downloads) docker_bioconductor-tidyomics

versions:

1.2.0-0

depends bioconductor-nullranges:

>=1.12.0,<1.13.0

depends bioconductor-plyranges:

>=1.26.0,<1.27.0

depends bioconductor-tidybulk:

>=1.18.0,<1.19.0

depends bioconductor-tidysinglecellexperiment:

>=1.16.0,<1.17.0

depends bioconductor-tidysummarizedexperiment:

>=1.16.0,<1.17.0

depends r-base:

>=4.4,<4.5.0a0

depends r-cli:

depends r-purrr:

depends r-rlang:

depends r-stringr:

depends r-tidyseurat:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-tidyomics

and update with::

   mamba update bioconductor-tidyomics

To create a new environment, run:

mamba create --name myenvname bioconductor-tidyomics

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-tidyomics:<tag>

(see `bioconductor-tidyomics/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tidyomics/README.html)