recipe bioconductor-tilingarray

Transcript mapping with high-density oligonucleotide tiling arrays

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/tilingArray.html

License:

Artistic-2.0

Recipe:

/bioconductor-tilingarray/meta.yaml

The package provides functionality that can be useful for the analysis of high-density tiling microarray data (such as from Affymetrix genechips) for measuring transcript abundance and architecture. The main functionalities of the package are: 1. the class 'segmentation' for representing partitionings of a linear series of data; 2. the function 'segment' for fitting piecewise constant models using a dynamic programming algorithm that is both fast and exact; 3. the function 'confint' for calculating confidence intervals using the strucchange package; 4. the function 'plotAlongChrom' for generating pretty plots; 5. the function 'normalizeByReference' for probe-sequence dependent response adjustment from a (set of) reference hybridizations.

package bioconductor-tilingarray

(downloads) docker_bioconductor-tilingarray

Versions:
1.76.0-11.76.0-01.72.0-21.72.0-11.72.0-01.70.0-01.68.0-11.68.0-01.66.0-0

1.76.0-11.76.0-01.72.0-21.72.0-11.72.0-01.70.0-01.68.0-11.68.0-01.66.0-01.64.0-01.62.0-11.60.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tilingarray

and update with:

conda update bioconductor-tilingarray

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tilingarray:<tag>

(see bioconductor-tilingarray/tags for valid values for <tag>)

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