- recipe bioconductor-tilingarray
Transcript mapping with high-density oligonucleotide tiling arrays
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/tilingArray.html
- License:
Artistic-2.0
- Recipe:
The package provides functionality that can be useful for the analysis of high-density tiling microarray data (such as from Affymetrix genechips) for measuring transcript abundance and architecture. The main functionalities of the package are: 1. the class 'segmentation' for representing partitionings of a linear series of data; 2. the function 'segment' for fitting piecewise constant models using a dynamic programming algorithm that is both fast and exact; 3. the function 'confint' for calculating confidence intervals using the strucchange package; 4. the function 'plotAlongChrom' for generating pretty plots; 5. the function 'normalizeByReference' for probe-sequence dependent response adjustment from a (set of) reference hybridizations.
- package bioconductor-tilingarray¶
-
- Versions:
1.76.0-1
,1.76.0-0
,1.72.0-2
,1.72.0-1
,1.72.0-0
,1.70.0-0
,1.68.0-1
,1.68.0-0
,1.66.0-0
,1.76.0-1
,1.76.0-0
,1.72.0-2
,1.72.0-1
,1.72.0-0
,1.70.0-0
,1.68.0-1
,1.68.0-0
,1.66.0-0
,1.64.0-0
,1.62.0-1
,1.60.0-0
- Depends:
bioconductor-affy
>=1.76.0,<1.77.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-genefilter
>=1.80.0,<1.81.0
bioconductor-vsn
>=3.66.0,<3.67.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-tilingarray
and update with:
conda update bioconductor-tilingarray
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-tilingarray:<tag>
(see bioconductor-tilingarray/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-tilingarray/README.html)