recipe bioconductor-tmixclust

Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines

Homepage

https://bioconductor.org/packages/3.14/bioc/html/TMixClust.html

License

GPL (>=2)

Recipe

/bioconductor-tmixclust/meta.yaml

Implementation of a clustering method for time series gene expression data based on mixed-effects models with Gaussian variables and non-parametric cubic splines estimation. The method can robustly account for the high levels of noise present in typical gene expression time series datasets.

package bioconductor-tmixclust

Versions

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-spem >=1.34.0,<1.35.0

• r-base >=4.1,<4.2.0a0

• r-cluster

• r-flexclust

• r-gss

• r-mvtnorm

• r-zoo

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tmixclust

and update with:

conda update bioconductor-tmixclust

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tmixclust:<tag>

(see bioconductor-tmixclust/tags for valid values for <tag>)

Download stats

Link to this page

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