- recipe bioconductor-tmixclust
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/TMixClust.html
- License
GPL (>=2)
- Recipe
Implementation of a clustering method for time series gene expression data based on mixed-effects models with Gaussian variables and non-parametric cubic splines estimation. The method can robustly account for the high levels of noise present in typical gene expression time series datasets.
- package bioconductor-tmixclust¶
-
- Versions
1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-spem
>=1.34.0,<1.35.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-tmixclust
and update with:
conda update bioconductor-tmixclust
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-tmixclust:<tag>
(see bioconductor-tmixclust/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-tmixclust/README.html)