recipe bioconductor-trackviewer

A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/trackViewer.html

License

GPL (>= 2)

Recipe

/bioconductor-trackviewer/meta.yaml

Links

biotools: trackviewer, doi: 10.1038/nmeth.3252

Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

package bioconductor-trackviewer

Versions

1.30.0-0,  1.28.0-0,  1.26.2-0,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.5-0,  1.18.0-1,  1.18.0-0, 

1.30.0-0,  1.28.0-0,  1.26.2-0,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.5-0,  1.18.0-1,  1.18.0-0,  1.16.1-0,  1.14.1-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-graph >=1.72.0,<1.73.0

• bioconductor-gviz >=1.38.0,<1.39.0

• bioconductor-interactionset >=1.22.0,<1.23.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rgraphviz >=2.38.0,<2.39.0

• bioconductor-rhdf5 >=2.38.0,<2.39.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.4.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=9.4.0

• r-base >=4.1,<4.2.0a0

• r-grimport

• r-htmlwidgets

• r-plotrix

• r-rcpp

• r-scales

Required By

• bioconductor-nadfinder

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-trackviewer

and update with:

conda update bioconductor-trackviewer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trackviewer:<tag>

(see bioconductor-trackviewer/tags for valid values for <tag>)

Download stats

Link to this page

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