recipe bioconductor-trackviewer

Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/trackViewer.html

License

GPL (>= 2)

Recipe

/bioconductor-trackviewer/meta.yaml

Links

biotools: trackviewer, doi: 10.1038/nmeth.3252

package bioconductor-trackviewer

Versions

1.18.0-1, 1.18.0-0, 1.16.1-0, 1.14.1-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-graph >=1.60.0,<1.61.0

• bioconductor-gviz >=1.26.0,<1.27.0

• bioconductor-interactionset >=1.10.0,<1.11.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rgraphviz >=2.26.0,<2.27.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-rtracklayer >=1.42.0,<1.43.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-base >=3.5.1,<3.5.2.0a0

• r-grimport

• r-htmlwidgets

• r-plotrix

• r-scales

Required By

• bioconductor-nadfinder

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-trackviewer

and update with:

conda update bioconductor-trackviewer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trackviewer:<tag>

(see bioconductor-trackviewer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-trackviewer/README.html)