recipe bioconductor-trackviewer

A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/trackViewer.html

License

GPL (>= 2)

Recipe

/bioconductor-trackviewer/meta.yaml

Links

biotools: trackviewer, doi: 10.1038/nmeth.3252

Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

package bioconductor-trackviewer

Versions

1.24.0-0, 1.22.0-0, 1.20.5-0, 1.18.0-1, 1.18.0-0, 1.16.1-0, 1.14.1-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-graph >=1.66.0,<1.67.0

• bioconductor-gviz >=1.32.0,<1.33.0

• bioconductor-interactionset >=1.16.0,<1.17.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rgraphviz >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

• r-grimport

• r-htmlwidgets

• r-plotrix

• r-scales

Required By

• bioconductor-nadfinder

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-trackviewer

and update with:

conda update bioconductor-trackviewer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trackviewer:<tag>

(see bioconductor-trackviewer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-trackviewer/README.html)