recipe bioconductor-trajectoryutils

Single-Cell Trajectory Analysis Utilities

Homepage

https://bioconductor.org/packages/3.14/bioc/html/TrajectoryUtils.html

License

GPL-3

Recipe

/bioconductor-trajectoryutils/meta.yaml

Implements low-level utilities for single-cell trajectory analysis, primarily intended for re-use inside higher-level packages. Include a function to create a cluster-level minimum spanning tree and data structures to hold pseudotime inference results.

package bioconductor-trajectoryutils

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-igraph

• r-matrix

Required By

• bioconductor-condiments

• bioconductor-tscan

• bioconductor-tradeseq

• bioconductor-slingshot

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-trajectoryutils

and update with:

conda update bioconductor-trajectoryutils

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trajectoryutils:<tag>

(see bioconductor-trajectoryutils/tags for valid values for <tag>)

Download stats

Link to this page

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