recipe bioconductor-trajectoryutils

Single-Cell Trajectory Analysis Utilities

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TrajectoryUtils.html

License:

GPL-3

Recipe:

/bioconductor-trajectoryutils/meta.yaml

Implements low-level utilities for single-cell trajectory analysis, primarily intended for re-use inside higher-level packages. Include a function to create a cluster-level minimum spanning tree and data structures to hold pseudotime inference results.

package bioconductor-trajectoryutils

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-igraph

• r-matrix

Required By:

• bioconductor-slingshot

• bioconductor-singlecelltk

• bioconductor-condiments

• bioconductor-tradeseq

• bioconductor-tscan

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-trajectoryutils

and update with:

conda update bioconductor-trajectoryutils

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trajectoryutils:<tag>

(see bioconductor-trajectoryutils/tags for valid values for <tag>)

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