recipe bioconductor-transomics2cytoscape

A tool set for 3D Trans-Omic network visualization with Cytoscape

Homepage

https://bioconductor.org/packages/3.14/bioc/html/transomics2cytoscape.html

License

Artistic-2.0

Recipe

/bioconductor-transomics2cytoscape/meta.yaml

transomics2cytoscape generates a file for 3D transomics visualization by providing input that specifies the IDs of multiple KEGG pathway layers, their corresponding Z-axis heights, and an input that represents the edges between the pathway layers. The edges are used, for example, to describe the relationships between kinase on a pathway and enzyme on another pathway. This package automates creation of a transomics network as shown in the figure in Yugi.2014 (https://doi.org/10.1016/j.celrep.2014.07.021) using Cytoscape automation (https://doi.org/10.1186/s13059-019-1758-4).

package bioconductor-transomics2cytoscape

(downloads) docker_bioconductor-transomics2cytoscape

Versions

1.4.0-01.2.1-01.0.0-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-transomics2cytoscape

and update with:

conda update bioconductor-transomics2cytoscape

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-transomics2cytoscape:<tag>

(see bioconductor-transomics2cytoscape/tags for valid values for <tag>)

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