recipe bioconductor-transview

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TransView.html

License:

GPL-3

Recipe:

/bioconductor-transview/meta.yaml

Links:

biotools: transview, doi: 10.1038/nmeth.3252

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

package bioconductor-transview

Versions:

1.42.0-0,  1.38.0-2,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0, 

1.42.0-0,  1.38.0-2,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rhtslib >=2.0.0,<2.1.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-zlibbioc >=1.44.0,<1.45.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-gplots

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-transview

and update with:

conda update bioconductor-transview

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-transview:<tag>

(see bioconductor-transview/tags for valid values for <tag>)

Download stats

Link to this page

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