recipe bioconductor-traser

GWAS trait-associated SNP enrichment analyses in genomic intervals

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/traseR.html

License:

GPL

Recipe:

/bioconductor-traser/meta.yaml

Links:

biotools: traser, doi: 10.1093/bioinformatics/btv741

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

package bioconductor-traser

Versions:

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0, 

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends:

• bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-traser

and update with:

conda update bioconductor-traser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-traser:<tag>

(see bioconductor-traser/tags for valid values for <tag>)

Download stats

Link to this page

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