recipe bioconductor-traviz

Trajectory functions for visualization and interpretation.

Homepage

https://bioconductor.org/packages/3.14/bioc/html/traviz.html

License

MIT + file LICENSE

Recipe

/bioconductor-traviz/meta.yaml

traviz provides a suite of functions to plot trajectory related objects from Bioconductor packages. It allows plotting trajectories in reduced dimension, as well as averge gene expression smoothers as a function of pseudotime. Asides from general utility functions, traviz also allows plotting trajectories estimated by Slingshot, as well as smoothers estimated by tradeSeq. Furthermore, it allows for visualization of Slingshot trajectories using ggplot2.

package bioconductor-traviz

(downloads) docker_bioconductor-traviz

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-traviz

and update with:

conda update bioconductor-traviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-traviz:<tag>

(see bioconductor-traviz/tags for valid values for <tag>)

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