recipe bioconductor-treeio

Base classes and functions for parsing and exporting phylogenetic trees. ‘treeio’ supports parsing analysis findings from commonly used software packages, allows linking external data to phylogeny and merging tree data obtained from different sources. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/treeio.html

License

Artistic-2.0

Recipe

/bioconductor-treeio/meta.yaml

package bioconductor-treeio

(downloads) docker_bioconductor-treeio

Versions

1.8.0-0, 1.6.2-0, 1.6.1-0, 1.4.3-0, 1.2.1-0, 1.2.0-0, 1.0.2-0

Depends r-ape

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dplyr

Depends r-jsonlite

Depends r-magrittr

Depends r-rlang

Depends r-tibble

Depends r-tidytree

>=0.2.3

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-treeio

and update with:

conda update bioconductor-treeio

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-treeio:<tag>

(see bioconductor-treeio/tags for valid values for <tag>)