recipe bioconductor-treeio

Base Classes and Functions for Phylogenetic Tree Input and Output






'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.

package bioconductor-treeio

(downloads) docker_bioconductor-treeio



depends r-ape:

depends r-base:


depends r-dplyr:

depends r-jsonlite:

depends r-magrittr:

depends r-rlang:

depends r-tibble:

depends r-tidytree:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-treeio

and update with::

   mamba update bioconductor-treeio

To create a new environment, run:

mamba create --name myenvname bioconductor-treeio

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-treeio/tags`_ for valid values for ``<tag>``)

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