recipe bioconductor-treeio

Base Classes and Functions for Phylogenetic Tree Input and Output

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/treeio.html

License:

Artistic-2.0

Recipe:

/bioconductor-treeio/meta.yaml

'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.

package bioconductor-treeio

Versions:

1.22.0-0,  1.18.0-0,  1.16.1-0,  1.14.3-0,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.1-0,  1.8.0-0, 

1.22.0-0,  1.18.0-0,  1.16.1-0,  1.14.3-0,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.1-0,  1.8.0-0,  1.6.2-0,  1.6.1-0,  1.4.3-0,  1.2.1-0,  1.2.0-0,  1.0.2-0

Depends:

• r-ape

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-jsonlite

• r-magrittr

• r-rlang

• r-tibble

• r-tidytree >=0.3.9

Required By:

• bioconductor-microbiotaprocess

• bioconductor-ggtree

• bioconductor-treesummarizedexperiment

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-treeio

and update with:

conda update bioconductor-treeio

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-treeio:<tag>

(see bioconductor-treeio/tags for valid values for <tag>)

Download stats

Link to this page

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