recipe bioconductor-treesummarizedexperiment

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TreeSummarizedExperiment.html

License:

GPL (>=2)

Recipe:

/bioconductor-treesummarizedexperiment/meta.yaml

TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data.

package bioconductor-treesummarizedexperiment

Versions:

2.6.0-0,  2.2.0-0,  2.0.0-0,  1.6.2-0,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.3-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-treeio >=1.22.0,<1.23.0

• r-ape

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-rlang

Required By:

• bioconductor-benchdamic

• bioconductor-mia

• bioconductor-miasim

• bioconductor-miaviz

• bioconductor-microbiomedatasets

• bioconductor-experimentsubset

• bioconductor-microbiomebenchmarkdata

• bioconductor-curatedmetagenomicdata

• bioconductor-cbea

• bioconductor-ancombc

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-treesummarizedexperiment

and update with:

conda update bioconductor-treesummarizedexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-treesummarizedexperiment:<tag>

(see bioconductor-treesummarizedexperiment/tags for valid values for <tag>)

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