recipe bioconductor-tress

Toolbox for mRNA epigenetics sequencing analysis



GPL-3 + file LICENSE



This package is devoted to analyzing MeRIP-seq data. Current functionalities include 1. detect transcriptome wide m6A methylation regions 2. detect transcriptome wide differential m6A methylation regions.

package bioconductor-tress

(downloads) docker_bioconductor-tress



depends bioconductor-annotationdbi:


depends bioconductor-genomicfeatures:


depends bioconductor-genomicranges:


depends bioconductor-iranges:


depends bioconductor-rsamtools:


depends bioconductor-rtracklayer:


depends bioconductor-s4vectors:


depends r-base:


depends r-matrix:

depends r-matrixstats:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-tress

and update with::

   mamba update bioconductor-tress

To create a new environment, run:

mamba create --name myenvname bioconductor-tress

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-tress/tags`_ for valid values for ``<tag>``)

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