recipe bioconductor-tress

Toolbox for mRNA epigenetics sequencing analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TRESS.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-tress/meta.yaml

This package is devoted to analyzing MeRIP-seq data. Current functionalities include 1. detection of transcriptome wide m6A methylation regions 2. detection of transcriptome wide differential m6A methylation regions.

package bioconductor-tress

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-matrix

• r-matrixstats

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tress

and update with:

conda update bioconductor-tress

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tress:<tag>

(see bioconductor-tress/tags for valid values for <tag>)

Download stats

Link to this page

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