recipe bioconductor-tress

Toolbox for mRNA epigenetics sequencing analysis

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/TRESS.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-tress/meta.yaml

This package is devoted to analyzing MeRIP-seq data. Current functionality is for detection of transcriptome-wide m6A methylation regions. The method is based on hierarchical negative binomial models.

package bioconductor-tress

Versions:

1.0.0-0

Depends:

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-matrix

• r-matrixstats

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tress

and update with:

conda update bioconductor-tress

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tress:<tag>

(see bioconductor-tress/tags for valid values for <tag>)

Download stats

Link to this page

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