recipe bioconductor-tricycle

tricycle: Transferable Representation and Inference of cell cycle

Homepage

https://bioconductor.org/packages/3.14/bioc/html/tricycle.html

License

GPL-3

Recipe

/bioconductor-tricycle/meta.yaml

The package contains functions to infer and visualize cell cycle process using Single Cell RNASeq data. It exploits the idea of transfer learning, projecting new data to the previous learned biologically interpretable space. We provide a pre-learned cell cycle space, which could be used to infer cell cycle time of human and mouse single cell samples. In addition, we also offer functions to visualize cell cycle time on different embeddings and functions to build new reference.

package bioconductor-tricycle

(downloads) docker_bioconductor-tricycle

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tricycle

and update with:

conda update bioconductor-tricycle

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tricycle:<tag>

(see bioconductor-tricycle/tags for valid values for <tag>)

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