recipe bioconductor-trigger

This R package provides tools for the statistical analysis of integrative genomic data that involve some combination of: genotypes, high-dimensional intermediate traits (e.g., gene expression, protein abundance), and higher-order traits (phenotypes). The package includes functions to: (1) construct global linkage maps between genetic markers and gene expression; (2) analyze multiple-locus linkage (epistasis) for gene expression; (3) quantify the proportion of genome-wide variation explained by each locus and identify eQTL hotspots; (4) estimate pair-wise causal gene regulatory probabilities and construct gene regulatory networks; and (5) identify causal genes for a quantitative trait of interest.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/trigger.html

License

GPL-3

Recipe

/bioconductor-trigger/meta.yaml

Links

biotools: trigger, doi: 10.1038/nmeth.3252

package bioconductor-trigger

(downloads) docker_bioconductor-trigger

Versions

1.28.0-0, 1.26.0-0, 1.24.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-trigger

and update with:

conda update bioconductor-trigger

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trigger:<tag>

(see bioconductor-trigger/tags for valid values for <tag>)