- recipe bioconductor-triplex
Search and visualize intramolecular triplex-forming sequences in DNA
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/triplex.html
- License:
BSD_2_clause + file LICENSE
- Recipe:
- Links:
biotools: triplex
This package provides functions for identification and visualization of potential intramolecular triplex patterns in DNA sequence. The main functionality is to detect the positions of subsequences capable of folding into an intramolecular triplex (H-DNA) in a much larger sequence. The potential H-DNA (triplexes) should be made of as many cannonical nucleotide triplets as possible. The package includes visualization showing the exact base-pairing in 1D, 2D or 3D.
- package bioconductor-triplex¶
-
- Versions:
1.38.0-0
,1.34.0-2
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.38.0-0
,1.34.0-2
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-xvector
>=0.38.0,<0.39.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-triplex
and update with:
conda update bioconductor-triplex
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-triplex:<tag>
(see bioconductor-triplex/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-triplex/README.html)