recipe bioconductor-trnadbimport

Importing from tRNAdb and mitotRNAdb as GRanges objects

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/tRNAdbImport.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-trnadbimport/meta.yaml

tRNAdbImport imports the entries of the tRNAdb and mtRNAdb (http://trna.bioinf.uni-leipzig.de) as GRanges object.

package bioconductor-trnadbimport

Versions:

1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.2-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-modstrings >=1.14.0,<1.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-structstrings >=1.14.0,<1.15.0

• bioconductor-trna >=1.16.0,<1.17.0

• r-base >=4.2,<4.3.0a0

• r-httr

• r-stringr

• r-xml2

Required By:

• bioconductor-epitxdb

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-trnadbimport

and update with:

conda update bioconductor-trnadbimport

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trnadbimport:<tag>

(see bioconductor-trnadbimport/tags for valid values for <tag>)

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