recipe bioconductor-trnascanimport

Importing a tRNAscan-SE result file as GRanges object

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/tRNAscanImport.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-trnascanimport/meta.yaml

The package imports the result of tRNAscan-SE as a GRanges object.

package bioconductor-trnascanimport

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.2-0,  1.2.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-structstrings >=1.14.0,<1.15.0

• bioconductor-trna >=1.16.0,<1.17.0

• bioconductor-xvector >=0.38.0,<0.39.0

• r-base >=4.2,<4.3.0a0

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-trnascanimport

and update with:

conda update bioconductor-trnascanimport

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trnascanimport:<tag>

(see bioconductor-trnascanimport/tags for valid values for <tag>)

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