- recipe bioconductor-tscan
Tools for Single-Cell Analysis
- Homepage:
- License:
GPL(>=2)
- Recipe:
- Links:
biotools: tscan, doi: 10.1093/nar/gkw430
Provides methods to perform trajectory analysis based on a minimum spanning tree constructed from cluster centroids. Computes pseudotemporal cell orderings by mapping cells in each cluster (or new cells) to the closest edge in the tree. Uses linear modelling to identify differentially expressed genes along each path through the tree. Several plotting and interactive visualization functions are also implemented.
- package bioconductor-tscan¶
-
- Versions:
1.36.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.36.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
- Depends:
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-trajectoryutils
>=1.6.0,<1.7.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-tscan
and update with:
conda update bioconductor-tscan
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-tscan:<tag>
(see bioconductor-tscan/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-tscan/README.html)