recipe bioconductor-ttmap

Two-Tier Mapper: a clustering tool based on topological data analysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/TTMap.html

License

GPL-2

Recipe

/bioconductor-ttmap/meta.yaml

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

package bioconductor-ttmap

Versions

1.10.0-0, 1.8.0-0, 1.6.0-1, 1.4.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-colorramps

• r-rgl

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ttmap

and update with:

conda update bioconductor-ttmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ttmap:<tag>

(see bioconductor-ttmap/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ttmap/README.html)