recipe bioconductor-ttmap

Two-Tier Mapper: a clustering tool based on topological data analysis

Homepage

https://bioconductor.org/packages/3.14/bioc/html/TTMap.html

License

GPL-2

Recipe

/bioconductor-ttmap/meta.yaml

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

package bioconductor-ttmap

Versions

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-colorramps

• r-rgl

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ttmap

and update with:

conda update bioconductor-ttmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ttmap:<tag>

(see bioconductor-ttmap/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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