recipe bioconductor-txdb.hsapiens.ucsc.hg19.knowngene

Annotation package for TxDb object(s)

Homepage

https://bioconductor.org/packages/3.12/data/annotation/html/TxDb.Hsapiens.UCSC.hg19.knownGene.html

License

Artistic-2.0

Recipe

/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/meta.yaml

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

package bioconductor-txdb.hsapiens.ucsc.hg19.knowngene

Versions

3.2.2-9,  3.2.2-8,  3.2.2-7,  3.2.2-6,  3.2.2-4,  3.2.2-3,  3.2.2-1,  3.2.2-0

Depends

• bioconductor-annotationdbi >=1.52.0,<1.53.0

• bioconductor-genomicfeatures >=1.42.0,<1.43.0

• curl >=7.71.1,<8.0a0

• r-base >=4.0,<4.1.0a0

Required By

• bioconductor-homo.sapiens

• bioconductor-rcgh

• bioconductor-musicatk

• bioconductor-rarevariantvis

• bioconductor-profileplyr

• bioconductor-fdb.infiniummethylation.hg19

• bioconductor-nearbynding

• bioconductor-chimera

• bioconductor-hilda

• bioconductor-umi4cats

• bioconductor-chipqc

• bioconductor-uncoverapplib

• bioconductor-chipseeker

• bioconductor-appreci8r

• bioconductor-decomptumor2sig

• bioconductor-alps

• r-genometricorr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-txdb.hsapiens.ucsc.hg19.knowngene

and update with:

conda update bioconductor-txdb.hsapiens.ucsc.hg19.knowngene

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene:<tag>

(see bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/tags for valid values for <tag>)

Link to this page

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