recipe bioconductor-txdb.hsapiens.ucsc.hg19.knowngene

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Homepage

https://bioconductor.org/packages/3.9/data/annotation/html/TxDb.Hsapiens.UCSC.hg19.knownGene.html

License

Artistic-2.0

Recipe

/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/meta.yaml

package bioconductor-txdb.hsapiens.ucsc.hg19.knowngene

Versions

3.2.2-6, 3.2.2-4, 3.2.2-3, 3.2.2-1, 3.2.2-0

Depends

• bioconductor-annotationdbi >=1.46.0,<1.47.0

• bioconductor-genomicfeatures >=1.36.0,<1.37.0

• curl >=7.65.3,<8.0a0

• r-base >=3.6,<3.7.0a0

Required By

• r-genometricorr

• bioconductor-chimera

• bioconductor-vulcan

• bioconductor-fdb.infiniummethylation.hg19

• bioconductor-homo.sapiens

• bioconductor-chipqc

• bioconductor-decomptumor2sig

• bioconductor-chipseeker

• bioconductor-rcgh

• bioconductor-rarevariantvis

• bioconductor-appreci8r

• bioconductor-profileplyr

• bioconductor-funcisnp

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-txdb.hsapiens.ucsc.hg19.knowngene

and update with:

conda update bioconductor-txdb.hsapiens.ucsc.hg19.knowngene

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene:<tag>

(see bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene/README.html)