recipe bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

Annotation package for TxDb object(s)

Homepage:

https://bioconductor.org/packages/3.17/data/annotation/html/TxDb.Mmusculus.UCSC.mm10.knownGene.html

License:

Artistic-2.0

Recipe:

/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/meta.yaml

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

package bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

versions:

3.10.0-8,  3.10.0-7,  3.10.0-6,  3.10.0-5,  3.10.0-4,  3.10.0-3,  3.10.0-2,  3.10.0-1,  3.10.0-0, 

3.10.0-8,  3.10.0-7,  3.10.0-6,  3.10.0-5,  3.10.0-4,  3.10.0-3,  3.10.0-2,  3.10.0-1,  3.10.0-0,  3.4.7-1,  3.4.4-0,  3.4.0-3,  3.4.0-1,  3.4.0-0

depends bioconductor-annotationdbi:

>=1.62.0,<1.63.0

depends bioconductor-data-packages:

>=20230706

depends bioconductor-genomicfeatures:

>=1.52.0,<1.53.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

and update with::

   mamba update bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

To create a new environment, run:

mamba create --name myenvname bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene:<tag>

(see `bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/tags`_ for valid values for ``<tag>``)

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