recipe bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Homepage

https://bioconductor.org/packages/3.9/data/annotation/html/TxDb.Mmusculus.UCSC.mm10.knownGene.html

License

Artistic-2.0

Recipe

/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/meta.yaml

package bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

Versions

3.4.7-1, 3.4.4-0, 3.4.0-3, 3.4.0-1, 3.4.0-0

Depends

• bioconductor-annotationdbi >=1.46.0,<1.47.0

• bioconductor-genomicfeatures >=1.36.0,<1.37.0

• curl >=7.65.3,<8.0a0

• r-base >=3.6,<3.7.0a0

Required By

• bioconductor-mus.musculus

• bioconductor-chipqc

• bioconductor-profileplyr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

and update with:

conda update bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene:<tag>

(see bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/tags for valid values for <tag>)

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/README.html)