recipe bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

Annotation package for TxDb object(s)

Homepage

https://bioconductor.org/packages/3.14/data/annotation/html/TxDb.Mmusculus.UCSC.mm10.knownGene.html

License

Artistic-2.0

Recipe

/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/meta.yaml

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

package bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

Versions

3.10.0-5,  3.10.0-4,  3.10.0-3,  3.10.0-2,  3.10.0-1,  3.10.0-0,  3.4.7-1,  3.4.4-0,  3.4.0-3, 

3.10.0-5,  3.10.0-4,  3.10.0-3,  3.10.0-2,  3.10.0-1,  3.10.0-0,  3.4.7-1,  3.4.4-0,  3.4.0-3,  3.4.0-1,  3.4.0-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-chipqc

• bioconductor-profileplyr

• bioconductor-mus.musculus

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

and update with:

conda update bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm10.knowngene:<tag>

(see bioconductor-txdb.mmusculus.ucsc.mm10.knowngene/tags for valid values for <tag>)

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