bioconductor-tximport¶
Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.
| Home | http://bioconductor.org/packages/3.5/bioc/html/tximport.html |
| Versions | 1.0.3, 1.4.0 |
| License | GPL (>=2) |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-tximport |
Installation¶
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-tximport
and update with:
conda update bioconductor-tximport
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-tximport.
Link to this page¶
Render an 
badge with the following Markdown:
[](http://bioconda.github.io/recipes/bioconductor-tximport/README.html)
