bioconductor-tximport

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Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

Home http://bioconductor.org/packages/release/bioc/html/tximport.html
Versions 1.0.3
License GPL (>=2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-tximport

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tximport

and update with:

conda update bioconductor-tximport

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-tximport.