- recipe bioconductor-tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/tximport.html
- License:
GPL (>=2)
- Recipe:
- Links:
biotools: tximport
Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.
- package bioconductor-tximport¶
-
- Versions:
1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.3-0
,1.12.1-1
,1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.3-0
,1.12.1-1
,1.12.1-0
,1.12.0-0
,1.10.1-0
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.0.3-1
,1.0.3-0
- Depends:
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-tximport
and update with:
conda update bioconductor-tximport
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-tximport:<tag>
(see bioconductor-tximport/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-tximport/README.html)