recipe bioconductor-tximportdata

tximportData

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/tximportData.html

License:

GPL (>= 2)

Recipe:

/bioconductor-tximportdata/meta.yaml

This package provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project. The quantifiers were Cufflinks, RSEM, kallisto, Salmon and Sailfish. alevin example output is also included. Forr details on version numbers, sample information, and details on calls, see the package vignette.

package bioconductor-tximportdata

(downloads) docker_bioconductor-tximportdata

versions:
1.30.0-01.28.0-01.25.0-01.22.0-11.22.0-01.20.0-01.18.0-11.18.0-01.17.0-0

1.30.0-01.28.0-01.25.0-01.22.0-11.22.0-01.20.0-01.18.0-11.18.0-01.17.0-01.16.0-01.14.0-01.12.0-11.12.0-01.10.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-tximportdata

and update with::

   mamba update bioconductor-tximportdata

To create a new environment, run:

mamba create --name myenvname bioconductor-tximportdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-tximportdata:<tag>

(see `bioconductor-tximportdata/tags`_ for valid values for ``<tag>``)

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