recipe bioconductor-ucell

Rank-based signature enrichment analysis for single-cell data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/UCell.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-ucell/meta.yaml

UCell is a package for evaluating gene signatures in single-cell datasets. UCell signature scores, based on the Mann-Whitney U statistic, are robust to dataset size and heterogeneity, and their calculation demands less computing time and memory than other available methods, enabling the processing of large datasets in a few minutes even on machines with limited computing power. UCell can be applied to any single-cell data matrix, and includes functions to directly interact with SingleCellExperiment and Seurat objects.

package bioconductor-ucell

Versions:

2.2.0-0

Depends:

• bioconductor-biocneighbors >=1.16.0,<1.17.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-data.table >=1.13.6

• r-matrix

Required By:

• bioconductor-escape

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ucell

and update with:

conda update bioconductor-ucell

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ucell:<tag>

(see bioconductor-ucell/tags for valid values for <tag>)

Download stats

Link to this page

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